[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: kim & cy)

EMDB-28138:
3D reconstruction of the apical complex of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28141:
3D reconstruction of the apical complex of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28142:
3D Reconstruction of Plasmodium falciparum (3D7) free merozoite
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY

EMDB-28125:
Plasmodium falciparum merozoites apical 2-ring units
Method: subtomogram averaging / : Sun SY, Pintilie GD

EMDB-28126:
Toxoplasma apical rings
Method: subtomogram averaging / : Sun SY, Pintilie GD

EMDB-28139:
Toxoplasma gondii apical complex (ionophore stimulated)
Method: electron tomography / : Segev-Zarko L, Sun SY, Kim CY, Egan ES, Chiu W, Boothroyd JC

EMDB-28140:
Toxoplasma gondii apical complex (non-stimulated)
Method: electron tomography / : Segev-Zarko L, Sun SY, Chiu W, Boothroyd JC

EMDB-27438:
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6
Method: single particle / : Zhu X, Saville JW, Mannar D, Berezuk AM, Subramaniam S

EMDB-27439:
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)
Method: single particle / : Zhu X, Saville JW, Mannar D, Berezuk AM, Subramaniam S

PDB-8di5:
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)
Method: single particle / : Zhu X, Saville JW, Mannar D, Berezuk AM, Subramaniam S

EMDB-24863:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, stalled at the condensation step, focused refinement of KS-KS'-ACP domains
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24862:
CryoEM structure of modular PKS holo-Lsd14 bound to antibody fragment 1B2, stalled at the condensation step, consensus refinement
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24864:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, stalled at the condensation step, focused refinement of LDAT domains
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24865:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, stalled at the condensation step, focused refinement of LD'AT' domains
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24866:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, stalled at the condensation step, focused refinement of KR domain
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24867:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, stalled at the condensation step, focused refinement of DD* and 1B2
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24869:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, consensus refinement
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24870:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, focused refinement of KSAT dimer
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24871:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, focused refinement of LDAT domains
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24872:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, focused refinement of LD'AT' domains
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24873:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, focused refinement of KR domain
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24874:
CryoEM map of modular PKS holo-Lsd14 bound to antibody fragment 1B2, focused refinement of DD* and 1B2
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24880:
CryoEM map of modular PKS apo-Lsd14 bound to antibody fragment 1B2, consensus refinement
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24868:
CryoEM structure of modular PKS holo-Lsd14 stalled at the condensation step and bound to antibody fragment 1B2, composite structure
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-24875:
CryoEM structure of modular PKS holo-Lsd14 bound to antibody fragment 1B2, composite structure
Method: single particle / : Bagde SR, Kim CY, Fromme JC

EMDB-11616:
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23)
Method: single particle / : Hallberg BM, Das H

PDB-7a25:
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23)
Method: single particle / : Hallberg BM, Das H

EMDB-11617:
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23) 2-up conformation
Method: single particle / : Hallberg BM, Das H

PDB-7a29:
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23) 2-up conformation
Method: single particle / : Hallberg BM, Das H

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-11002:
CryoEM structure of bovine cytochrome bc1 in complex with a tetrahydroquinolone inhibitor
Method: single particle / : Muench SP, Johnson R, Amporndanai K, Atonyuk S

EMDB-0554:
Cryo-EM Structure of the Lysosomal Folliculin Complex (FLCN-FNIP2-RagA-RagC-Ragulator)
Method: single particle / : Fromm SA, Young LN, Hurley JH

EMDB-0556:
Cryo-EM Map of the active Ragulator-RagA-RagC Complex
Method: single particle / : Yokom AL, Fromm SA, Hurley JH

PDB-5ty4:
MicroED structure of a complex between monomeric TGF-b and its receptor, TbRII, at 2.9 A resolution
Method: electron crystallography / : Weiss SC, de la Cruz MJ, Hattne J, Shi D, Reyes FE, Callero G, Gonen T

PDB-5k7n:
MicroED structure of tau VQIVYK peptide at 1.1 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

PDB-5k7o:
MicroED structure of lysozyme at 1.8 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

PDB-5k7p:
MicroED structure of xylanase at 2.3 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

PDB-5k7q:
MicroED structure of thaumatin at 2.5 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

PDB-5k7r:
MicroED structure of trypsin at 1.7 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

PDB-5k7s:
MicroED structure of proteinase K at 1.6 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

PDB-5k7t:
MicroED structure of thermolysin at 2.5 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

EMDB-8216:
MicroED structure of tau VQIVYK peptide at 1.1 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J

EMDB-8217:
MicroED structure of lysozyme at 1.8 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

EMDB-8218:
MicroED structure of xylanase at 2.3 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J

EMDB-8219:
MicroED structure of thaumatin at 2.5 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

EMDB-8220:
MicroED structure of trypsin at 1.7 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

EMDB-8221:
MicroED structure of proteinase K at 1.6 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Eisenberg D, Gonen T

EMDB-8222:
MicroED structure of thermolysin at 2.5 A resolution
Method: electron crystallography / : de la Cruz MJ, Hattne J

EMDB-8472:
MicroED structure of a complex between monomeric TGF-b and its receptor, TbRII, at 2.9 A resolution
Method: electron crystallography / : Weiss SC, de la Cruz MJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more